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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39904724_39905581_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39904724 - 39905581
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
TGTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGATTATGAAAC
Flanking Amino Acid:
AHFKYHLKTHRNDRSFTCPA
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.3
42.2
Major BPS
75.5
0.63
1
66
40.9
Major PPT
83.3
0.75
0.9
77.1
37.1
Minor 5ss
33.8
-1.8
2.9
40.4
45.5
Minor BPS
47.9
-0.1
1.8
59.73
38.2

Associated Gene:

Gene:
ZNF410
Ensembl Gene ID:
ENSAPLG00000013581
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014156
39902519 - 39910639
8121