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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39908587_39909703_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39908587 - 39909703
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TTCTTCTCCAAG
Flanking Amino Acid:
SLRKHLVVHSGVKPHQCQIC
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
72.3
0.5
1
71.1
33.5
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
45.7
-0.4
2.1
56.14
45.3

Associated Gene:

Gene:
ZNF410
Ensembl Gene ID:
ENSAPLG00000013581
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014156
39902519 - 39910639
8121