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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39909830_39910373_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39909830 - 39910373
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAATA
Flanking Amino Acid:
TAGSREREQPESLMGSSLLE
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.1
0.57
0.9
72
32.6
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
59.3
0.29
1.8
76.28
34.8

Associated Gene:

Gene:
ZNF410
Ensembl Gene ID:
ENSAPLG00000013581
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014156
39902519 - 39910639
8121