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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39914164_39914410_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39914164 - 39914410
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
ACTATTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAC
U12 Branch Point Sequence:
ATTTCCAGTATT
Flanking Amino Acid:
DLLEEESDIHRVPQPQSEKN
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
60.5
0.26
1
58.5
38.2
Major PPT
79.7
0.67
0.9
73.6
36.2
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
49.5
0.05
2
76.44
40.1

Associated Gene:

Gene:
FAM161B
Ensembl Gene ID:
ENSAPLG00000013697
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014265
39913073 - 39918923
5851