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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39916738_39917029_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39916738 - 39917029
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TTCTCCTATACA
Flanking Amino Acid:
DATRKRESAIRCSQESKKEG
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
81.6
0.71
0.8
76.6
31
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
60.7
0.33
2
75.21
42.3

Associated Gene:

Gene:
FAM161B
Ensembl Gene ID:
ENSAPLG00000013697
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014265
39913073 - 39918923
5851