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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39921606_39921996_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39921606 - 39921996
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCATAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATCACATAGCT
Flanking Amino Acid:
LRFKPFRRMQVWDACSEAII
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.2
59.3
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
37.3
-1.4
3.3
50
46.5
Minor BPS
48.6
-0
2
73.56
42.2

Associated Gene:

Gene:
COQ6
Ensembl Gene ID:
ENSAPLG00000013830
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014441
39919664 - 39927217
7554