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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39923647_39924072_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39923647 - 39924072
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTGCATGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
SFVDSINSAFWSNVNHTDFI
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
76.1
32.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.4
0.59
1
73.1
41.8
Minor 5ss
37.4
-1.4
2.9
51.7
39.2
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
COQ6
Ensembl Gene ID:
ENSAPLG00000013830
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014441
39919664 - 39927217
7554