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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39924276_39925258_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39924276 - 39925258
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTCC
5'SS Class:
major
3'SS Sequence:
TTTCTTGCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AGGGTCTAAATT
Flanking Amino Acid:
EYVQHRVALIGDAAHRVHPL
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.5
39
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
80.6
0.69
0.8
73.8
36.9
Minor 5ss
37.6
-1.4
3.2
43.1
44.2
Minor BPS
48.8
-0
1.7
61.92
42.8

Associated Gene:

Gene:
COQ6
Ensembl Gene ID:
ENSAPLG00000013830
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014441
39919664 - 39927217
7554