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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39925375_39925756_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39925375 - 39925756
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATATGAATA
Flanking Amino Acid:
SAAAFNGQDLGSLRHLLKFE
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
76.9
38.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.5
0.8
0.8
77.6
36.5
Minor 5ss
36.4
-1.5
3.3
43.8
43.8
Minor BPS
49.1
-0
1.7
63.08
36.6

Associated Gene:

Gene:
COQ6
Ensembl Gene ID:
ENSAPLG00000013830
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014441
39919664 - 39927217
7554