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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39950203_39950955_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39950203 - 39950955
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAATGAG
5'SS Class:
major
3'SS Sequence:
TTCTGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTGCTTACTT
Flanking Amino Acid:
QQAQEENKKLTDYYAQQIKE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
63.5
36.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83
0.74
0.8
77.1
36.1
Minor 5ss
26.1
-2.7
3.1
27.3
39.2
Minor BPS
65.3
0.56
2
87.41
38.9

Associated Gene:

Gene:
BBOF1
Ensembl Gene ID:
ENSAPLG00000014370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014975
39948144 - 39961739
13596