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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39956358_39956741_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39956358 - 39956741
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAAATTTAAACA
Flanking Amino Acid:
RLEKRFLEEKKRLEEDTEKK
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.3
0.84
0.7
84.9
22.7
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
48.7
-0.1
1.6
56.02
36.7

Associated Gene:

Gene:
BBOF1
Ensembl Gene ID:
ENSAPLG00000014370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014975
39948144 - 39961739
13596