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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39956813_39957211_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39956813 - 39957211
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
TCCCTTTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTGATTAAAG
Flanking Amino Acid:
MTETAQREAVLQLNSMGREV
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.8
34.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
0.9
71.8
38.1
Minor 5ss
36.3
-1.5
3
49.9
40.6
Minor BPS
49.1
-0.2
2.2
61.84
45.5

Associated Gene:

Gene:
BBOF1
Ensembl Gene ID:
ENSAPLG00000014370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014975
39948144 - 39961739
13596