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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39957357_39957779_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
39957357 - 39957779
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTCTGCT
5'SS Class:
weak_major
3'SS Sequence:
CTTACCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCTTACCC
Flanking Amino Acid:
EDKTLLLLEKETSEGLIRKK
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.29
1.3
63.6
40.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77
0.61
0.8
74
30.9
Minor 5ss
43.3
-0.7
2.9
60.2
44.2
Minor BPS
60.7
0.32
1.7
70.24
41.4

Associated Gene:

Gene:
BBOF1
Ensembl Gene ID:
ENSAPLG00000014370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014975
39948144 - 39961739
13596