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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39959175_39960813_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39959175 - 39960813
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATACTC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCTTCCTTACAG
Flanking Amino Acid:
LFAKMNGRNPWKYSRVLATS
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.5
39.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89.3
0.88
0.6
84
24.2
Minor 5ss
36.7
-1.5
3.2
48.8
41.3
Minor BPS
62.7
0.26
1.8
68.4
44.9

Associated Gene:

Gene:
BBOF1
Ensembl Gene ID:
ENSAPLG00000014370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014975
39948144 - 39961739
13596