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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39960877_39961423_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39960877 - 39961423
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTACCTTAAAT
Flanking Amino Acid:
PADAKEESEVGTENVSSNLV
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.6
0.82
0.8
81
30.7
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
81.8
1.08
1.3
94.62
31.7

Associated Gene:

Gene:
BBOF1
Ensembl Gene ID:
ENSAPLG00000014370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014975
39948144 - 39961739
13596