Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39972393_39972483_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39972393 - 39972483

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGCGC

5'SS Class:

major

3'SS Sequence:

CCGTCTCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CCCCCCTTCACC

Flanking Amino Acid:

MAAAADGADLEASLLS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

55.2

43.9

Major BPS

72.7

0.56

30.1

Major PPT

78.6

0.64

0.8

72.5

32.2

Minor 5ss

26.1

-2.7

3.1

33.6

41.9

Minor BPS

53.8

0.1

1.8

59.26

Associated Gene:

Gene:

LIN52

Ensembl Gene ID:

ENSAPLG00000014829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015452

39972374 - 40012622

40249