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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39972559_39972646_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39972559 - 39972646
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GCCCCGCTGACG
Flanking Amino Acid:
RASPDLWPEQLPGVAEFAAS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.3
74.8
38.1
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
82.2
0.72
0.8
76.3
32.3
Minor 5ss
41.6
-0.9
3
53.7
43.8
Minor BPS
39.9
-0.9
2.3
41.49
43.1

Associated Gene:

Gene:
LIN52
Ensembl Gene ID:
ENSAPLG00000014829
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015452
39972374 - 40012622
40249