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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39973098_39974080_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39973098 - 39974080
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GTGTTAAAAAAT
Flanking Amino Acid:
LENDDIDMLKELGSLTTANL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83
0.74
0.7
81.3
23.8
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
41.2
-0.5
2.1
59.83
43

Associated Gene:

Gene:
LIN52
Ensembl Gene ID:
ENSAPLG00000014829
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015452
39972374 - 40012622
40249