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Intron Name: Anas_platyrhynchos_platyrhynchos_5_39974165_40012566_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39974165 - 40012566

Intron Length:

38402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTGATTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTTTCAATATTA

Flanking Amino Acid:

NLAYQLGLDESREMTRGKFL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.5

28.7

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

77.6

0.62

0.9

73.8

40.5

Minor 5ss

45.3

-0.5

2.8

64.3

39.9

Minor BPS

50.9

0.02

2.1

73.69

Associated Gene:

Gene:

LIN52

Ensembl Gene ID:

ENSAPLG00000014829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015452

39972374 - 40012622

40249