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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3999486_4089584_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3999486 - 4089584

Intron Length:

90099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

TCTTCTTTTCTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

85.6

30.4

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

84.7

0.78

0.7

80.6

31.5

Minor 5ss

44.2

-0.6

2.9

66.4

38.5

Minor BPS

43.7

-0.4

3.6

74.98

42.6

Associated Gene:

Gene:

SOX6

Ensembl Gene ID:

ENSAPLG00000008744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009100

3768142 - 4089655

321514