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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40081770_40082909_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40081770 - 40082909
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTTAC
U12 Branch Point Sequence:
TGGGGCTTACGG
Flanking Amino Acid:
RLFYLQPRYAVLDEATSALT
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
49.4
-0
1.3
43.1
41.5
Major PPT
78.9
0.65
0.9
76.2
37.8
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
40
-0.8
2.3
43.02
48.3

Associated Gene:

Gene:
ABCD4
Ensembl Gene ID:
ENSAPLG00000014842
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015488
40081399 - 40097514
16116