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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40085036_40085268_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
40085036 - 40085268
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GGTGGCCCAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTAAG
U12 Branch Point Sequence:
TCTCCTTTGTCT
Flanking Amino Acid:
SEAKAGWDLDSYSEEDAVPK
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
52.8
0.07
1.7
63.6
42.5
Major PPT
56.5
0.15
1
48.5
40.5
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
45.8
-0.2
3.4
76.16
41

Associated Gene:

Gene:
ABCD4
Ensembl Gene ID:
ENSAPLG00000014842
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015488
40081399 - 40097514
16116