About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40085359_40085517_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40085359 - 40085517
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATGCACC
Flanking Amino Acid:
TVTDVAGYTHRIGELQETLL
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
79
0.65
0.9
72.8
42.2
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
46.9
-0.2
2.2
61.8
43

Associated Gene:

Gene:
ABCD4
Ensembl Gene ID:
ENSAPLG00000014842
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015488
40081399 - 40097514
16116