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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40086447_40088729_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40086447 - 40088729
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TCATATTTTACA
Flanking Amino Acid:
RVNAEPAAFYRAGRVEHMRT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
82
0.72
0.9
76
37.5
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
52.8
0.08
1.8
64.72
41.4

Associated Gene:

Gene:
ABCD4
Ensembl Gene ID:
ENSAPLG00000014842
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015488
40081399 - 40097514
16116