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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40088781_40093274_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40088781 - 40093274
Intron Length:
4494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGGGGTTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATATGATC
Flanking Amino Acid:
VEQEKLEGDFRFKHMQIRVN
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.3
0.35
1.1
61.5
48.6
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
48.7
-0.1
1.7
64.09
35.4

Associated Gene:

Gene:
ABCD4
Ensembl Gene ID:
ENSAPLG00000014842
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015488
40081399 - 40097514
16116