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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40097027_40097235_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40097027 - 40097235
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
GCCTCCGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCCTTCCCATCT
Flanking Amino Acid:
ALTLIVVNSTLKSFDQFICN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.9
43.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
71
0.47
0.9
60.8
40.2
Minor 5ss
31.8
-2.1
3.1
40.3
45.3
Minor BPS
42
-0.5
2
55.75
46.6

Associated Gene:

Gene:
ABCD4
Ensembl Gene ID:
ENSAPLG00000014842
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015488
40081399 - 40097514
16116