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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40097364_40097480_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40097364 - 40097480
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCGG
5'SS Class:
major
3'SS Sequence:
CTCTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCGTTCCCATCC
Flanking Amino Acid:
FLTLLCVALLEQLVIYQVGV
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
54.5
49.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
84.7
0.78
0.7
77
31.8
Minor 5ss
36.8
-1.5
3
39.4
45.9
Minor BPS
43.6
-0.5
2
54.56
43.6

Associated Gene:

Gene:
ABCD4
Ensembl Gene ID:
ENSAPLG00000014842
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015488
40081399 - 40097514
16116