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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40158005_40158170_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40158005 - 40158170
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATGCTTAATT
Flanking Amino Acid:
SLDTVVNPDDRVFEQGGARV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.06
0.8
83.5
27.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.2
0.7
0.8
77.2
31.6
Minor 5ss
22.2
-3.2
3.8
31.6
42.4
Minor BPS
69.2
0.68
1.7
82.12
39.3

Associated Gene:

Gene:
ISCA2
Ensembl Gene ID:
ENSAPLG00000022258
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018967
40157830 - 40158705
876
ENSAPLT00000018932
40157677 - 40158678
1002