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Intron Name: Anas_platyrhynchos_platyrhynchos_5_40162332_40162434_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40162332 - 40162434

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGCCCC

5'SS Class:

major

3'SS Sequence:

CTGCTCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTGAC

U12 Branch Point Sequence:

CAGCCCGTGACC

Flanking Amino Acid:

LAEPLRFVDCGSKDGSIQEV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.56

57.1

42.2

Major BPS

48.6

-0

1.2

40.4

Major PPT

74.8

0.56

0.8

31.5

Minor 5ss

34.2

-1.8

44.2

43.2

Minor BPS

47.6

-0.2

2.1

55.84

42.8

Associated Gene:

Gene:

NPC2

Ensembl Gene ID:

ENSAPLG00000017454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037912

40162253 - 40164350

2098