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Intron Name: Anas_platyrhynchos_platyrhynchos_5_40162543_40162738_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40162543 - 40162738

Intron Length:

196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

CCGTGTCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCAC

U12 Branch Point Sequence:

GCACTCACACTT

Flanking Amino Acid:

SYSINVTFSSKIESQGSKAK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

72.9

36.6

Major BPS

64.9

0.37

29.8

Major PPT

0.41

0.9

61.3

35.1

Minor 5ss

39.2

-1.2

2.7

37.4

Minor BPS

38.3

-0.8

1.8

47.83

38.5

Associated Gene:

Gene:

NPC2

Ensembl Gene ID:

ENSAPLG00000017454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037912

40162253 - 40164350

2098