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Intron Name: Anas_platyrhynchos_platyrhynchos_5_40165388_40167724_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40165388 - 40167724

Intron Length:

2337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

ACTGCCTCACCC

Flanking Amino Acid:

QLDMTHMACVDINECDEVGG

Intron Amino Acid Position:

1446

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

66.6

39.6

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

82.2

0.72

0.7

76.4

25.7

Minor 5ss

27.1

-2.6

26.2

36.9

Minor BPS

48.9

-0.1

1.9

60.61

44.7

Associated Gene:

Gene:

LTBP2

Ensembl Gene ID:

ENSAPLG00000015140

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030264

40165221 - 40168922

3702

ENSAPLT00000015838

40163450 - 40214772

51323

ENSAPLT00000033171

40165221 - 40195232

30012