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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40167875_40168068_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40167875 - 40168068
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCCACCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGCTCTGACAT
Flanking Amino Acid:
PPPRYLPSQPGLYEGFEGLQ
Intron Amino Acid Position:
1396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.4
0.44
0.9
58.5
38.1
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
44.6
-0.3
1.8
58.92
44.1

Associated Gene:

Gene:
LTBP2
Ensembl Gene ID:
ENSAPLG00000015140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015838
40163450 - 40214772
51323