Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40167941_40168474_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

40167941 - 40168474

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

CCATCTCACCAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

ACCATCTCACCA

Flanking Amino Acid:

NCALCPHRASVPDVPSGQAG

Intron Amino Acid Position:

1048

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

54.4

44.7

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

54.8

0.11

1.1

52.6

35.9

Minor 5ss

30.8

-2.2

3.3

38.2

46.7

Minor BPS

44.6

-0.4

1.8

49.83

41.5

Associated Gene:

Gene:

LTBP2

Ensembl Gene ID:

ENSAPLG00000015140

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033171

40165221 - 40195232

30012