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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40170993_40172087_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40170993 - 40172087
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
CCTGCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
ACTGCTGTGACT
Flanking Amino Acid:
SNTAGGVSCQDIDECANETL
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
71.9
0.49
0.9
64.8
36.4
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
48.6
-0
2.1
68.38
43.3

Associated Gene:

Gene:
LTBP2
Ensembl Gene ID:
ENSAPLG00000015140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033171
40165221 - 40195232
30012