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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40171990_40172087_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40171990 - 40172087
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
CCTGGTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCAGCCTGACGT
Flanking Amino Acid:
SNTAGGVSCQDVDECADKSR
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
75.6
0.58
0.9
68.7
37.2
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
41.9
-0.5
2
52.76
48

Associated Gene:

Gene:
LTBP2
Ensembl Gene ID:
ENSAPLG00000015140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033005
40165221 - 40173098
7878
ENSAPLT00000028475
40165221 - 40193193
27973
ENSAPLT00000015838
40163450 - 40214772
51323