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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40172214_40172495_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40172214 - 40172495
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAACC
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GGGGCTCTGACT
Flanking Amino Acid:
FELLNGTVCQDVNECLNSEI
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.7
36.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
79
0.65
0.8
72.8
32
Minor 5ss
33.7
-1.9
3.1
44.5
43
Minor BPS
47.2
-0.1
1.8
61.05
42.9

Associated Gene:

Gene:
LTBP2
Ensembl Gene ID:
ENSAPLG00000015140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015838
40163450 - 40214772
51323
ENSAPLT00000033171
40165221 - 40195232
30012