Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40172619_40174060_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40172619 - 40174060

Intron Length:

1442

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAC

U12 Branch Point Sequence:

GGGGCCTCACTC

Flanking Amino Acid:

AVSRDGSVCEDVDECEDPAV

Intron Amino Acid Position:

855

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.7

1.08

0.8

94.2

18.1

Major BPS

54.7

0.12

1.2

59.2

39.1

Major PPT

0.58

72.7

37.5

Minor 5ss

27.9

-2.5

4.2

47.8

47.9

Minor BPS

-0.4

1.9

47.78

42.1

Associated Gene:

Gene:

LTBP2

Ensembl Gene ID:

ENSAPLG00000015140

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033171

40165221 - 40195232

30012

ENSAPLT00000015838

40163450 - 40214772

51323