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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40175577_40178249_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40175577 - 40178249
Intron Length:
2673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGGTTA
5'SS Class:
major
3'SS Sequence:
CAACTGTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
TCCCTGCCAACT
Flanking Amino Acid:
HPGITAGEGRTLWSYRLLGQ
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1
65.5
36.7
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
65
0.34
0.9
58.3
37.8
Minor 5ss
36.1
-1.6
3.4
42.8
45.4
Minor BPS
39.7
-0.7
2.3
57.59
45.1

Associated Gene:

Gene:
LTBP2
Ensembl Gene ID:
ENSAPLG00000015140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028475
40165221 - 40193193
27973