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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40190724_40192285_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40190724 - 40192285
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GACGCCTGACCT
Flanking Amino Acid:
RCFREALHGQCTNPLPGLTR
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
82.1
0.72
0.7
76.4
25.6
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
47.9
-0
1.9
62.68
46.8

Associated Gene:

Gene:
LTBP2
Ensembl Gene ID:
ENSAPLG00000015140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015838
40163450 - 40214772
51323