Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40193214_40194644_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40193214 - 40194644

Intron Length:

1431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGCACC

5'SS Class:

major

3'SS Sequence:

CTTTGCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTCAG

U12 Branch Point Sequence:

GTGTCCCCACTC

Flanking Amino Acid:

DHDPKSGFRIYFCQIPCLNG

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.1

59.2

39.9

Major BPS

50.8

0.02

1.5

37.5

Major PPT

83.5

0.75

0.8

77.1

31.6

Minor 5ss

38.1

-1.3

54.5

42.5

Minor BPS

44.3

-0.4

2.1

56.06

42.5

Associated Gene:

Gene:

LTBP2

Ensembl Gene ID:

ENSAPLG00000015140

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015838

40163450 - 40214772

51323