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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40241215_40241393_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40241215 - 40241393
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTTGTCTTACAG
Flanking Amino Acid:
THSTLPTAHTCFNQLCLPTY
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
74.1
0.6
1
69
38.9
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
52.6
-0
1.9
63.72
44.3

Associated Gene:

Gene:
AREL1
Ensembl Gene ID:
ENSAPLG00000001964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039308
40241112 - 40256072
14961
ENSAPLT00000002046
40241112 - 40256072
14961