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Intron Name: Anas_platyrhynchos_platyrhynchos_5_40241570_40242557_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40241570 - 40242557

Intron Length:

988

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TGCTGCCTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

CTTACCTTTACT

Flanking Amino Acid:

VGGSWHFREKVMRWFWTVVS

Intron Amino Acid Position:

657

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.6

32.8

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

68.3

0.41

62.1

38.7

Minor 5ss

30.6

-2.2

3.4

39.4

46.5

Minor BPS

70.5

0.73

1.7

85.18

Associated Gene:

Gene:

AREL1

Ensembl Gene ID:

ENSAPLG00000001964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002046

40241112 - 40256072

14961

ENSAPLT00000039308

40241112 - 40256072

14961