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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40242892_40242978_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40242892 - 40242978
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
TCTTCTTTTCTT
Flanking Amino Acid:
VREEVDHFLKGLNELVPENL
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
66.9
40
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
43.8
-0.7
2.9
60
44.6
Minor BPS
43.7
-0.4
3.6
74.98
42.6

Associated Gene:

Gene:
AREL1
Ensembl Gene ID:
ENSAPLG00000001964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039308
40241112 - 40256072
14961
ENSAPLT00000002046
40241112 - 40256072
14961