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Intron Name: Anas_platyrhynchos_platyrhynchos_5_40243109_40243298_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40243109 - 40243298

Intron Length:

190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

CTCCTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTCAT

U12 Branch Point Sequence:

CTCATGTGAAGT

Flanking Amino Acid:

KYSKTGQLEKVVELVTGGAQ

Intron Amino Acid Position:

564

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.5

42.7

Major BPS

74.8

0.62

0.9

75.3

29.7

Major PPT

82.2

0.73

0.8

79.5

32.5

Minor 5ss

26.2

-2.7

2.9

30.6

42.9

Minor BPS

40.6

-0.6

2.3

56.3

46.2

Associated Gene:

Gene:

AREL1

Ensembl Gene ID:

ENSAPLG00000001964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039308

40241112 - 40256072

14961

ENSAPLT00000002046

40241112 - 40256072

14961