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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40244737_40245127_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40244737 - 40245127
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTTGTTTTATCT
Flanking Amino Acid:
NFEVVFQDEEALDWGGPRRE
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.1
0.81
0.7
81.8
29.8
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
57
0.3
1.7
74.38
43.4

Associated Gene:

Gene:
AREL1
Ensembl Gene ID:
ENSAPLG00000001964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039308
40241112 - 40256072
14961
ENSAPLT00000002046
40241112 - 40256072
14961