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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40260727_40261121_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40260727 - 40261121
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CGTATCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TGATGCTGAATG
Flanking Amino Acid:
KLGQRYRVALRIAKDPRFER
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
69.2
0.43
0.9
61.4
35
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
49.9
-0.1
2
58.07
43.4

Associated Gene:

Gene:
FCF1
Ensembl Gene ID:
ENSAPLG00000002613
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002648
40259800 - 40263062
3263