Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40268334_40272854_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40268334 - 40272854

Intron Length:

4521

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTGTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

TTTTTCTGAGAA

Flanking Amino Acid:

QPDPATMTPQEQQQYWYQQH

Intron Amino Acid Position:

387

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

74.7

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

74.1

0.54

0.9

69.1

Minor 5ss

26.2

-2.7

2.9

29.6

43.4

Minor BPS

56.4

0.2

1.8

73.5

37.9

Associated Gene:

Gene:

YLPM1

Ensembl Gene ID:

ENSAPLG00000002844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031518

40267176 - 40304438

37263

ENSAPLT00000002898

40267176 - 40304438

37263