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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40287290_40288408_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40287290 - 40288408
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACC
Flanking Amino Acid:
QQTVDYGHGRDITTSKVEQI
Intron Amino Acid Position:
1704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.5
0.6
1
71.4
42.9
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
79.9
0.92
1
82.59
30.6

Associated Gene:

Gene:
YLPM1
Ensembl Gene ID:
ENSAPLG00000002844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002898
40267176 - 40304438
37263