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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40287290_40288898_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40287290 - 40288898
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATAGTT
Flanking Amino Acid:
QQTVDYGHGRDHPGRYNRER
Intron Amino Acid Position:
1704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91
0.92
0.6
89
20
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
50.3
0.09
1.8
72.98
38.4

Associated Gene:

Gene:
YLPM1
Ensembl Gene ID:
ENSAPLG00000002844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031518
40267176 - 40304438
37263