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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40288502_40288898_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40288502 - 40288898
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATAGTT
Flanking Amino Acid:
PLPERQTFQKDHPGRYNRER
Intron Amino Acid Position:
1735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91
0.92
0.6
89
20
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
50.3
0.09
1.8
72.98
38.4

Associated Gene:

Gene:
YLPM1
Ensembl Gene ID:
ENSAPLG00000002844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002898
40267176 - 40304438
37263